Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CDZ68509.1 | pnp | NGAL_HAMBI2610_01010 | NGAL_HAMBI2610_00410 | 3'-5' exonuclease. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.668 |
| CDZ68509.1 | rnr | NGAL_HAMBI2610_01010 | NGAL_HAMBI2610_29330 | 3'-5' exonuclease. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.896 |
| CDZ68509.1 | rph | NGAL_HAMBI2610_01010 | NGAL_HAMBI2610_03880 | 3'-5' exonuclease. | TRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.897 |
| CDZ68509.1 | rsmA | NGAL_HAMBI2610_01010 | NGAL_HAMBI2610_31180 | 3'-5' exonuclease. | Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.643 |
| CDZ69367.1 | rnr | NGAL_HAMBI2610_09660 | NGAL_HAMBI2610_29330 | TRNA/rRNA methyltransferase (SpoU). | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.670 |
| CDZ71323.1 | CDZ71324.1 | NGAL_HAMBI2610_29340 | NGAL_HAMBI2610_29350 | Hypothetical protein. | NUDIX hydrolase. | 0.859 |
| CDZ71323.1 | rnr | NGAL_HAMBI2610_29340 | NGAL_HAMBI2610_29330 | Hypothetical protein. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.823 |
| CDZ71323.1 | yfkF | NGAL_HAMBI2610_29340 | NGAL_HAMBI2610_29360 | Hypothetical protein. | YfkF. | 0.801 |
| CDZ71324.1 | CDZ71323.1 | NGAL_HAMBI2610_29350 | NGAL_HAMBI2610_29340 | NUDIX hydrolase. | Hypothetical protein. | 0.859 |
| CDZ71324.1 | rnr | NGAL_HAMBI2610_29350 | NGAL_HAMBI2610_29330 | NUDIX hydrolase. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.890 |
| CDZ71324.1 | yfkF | NGAL_HAMBI2610_29350 | NGAL_HAMBI2610_29360 | NUDIX hydrolase. | YfkF. | 0.759 |
| bpt | rnr | NGAL_HAMBI2610_30570 | NGAL_HAMBI2610_29330 | Putative arginyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.695 |
| pnp | CDZ68509.1 | NGAL_HAMBI2610_00410 | NGAL_HAMBI2610_01010 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 3'-5' exonuclease. | 0.668 |
| pnp | rnd | NGAL_HAMBI2610_00410 | NGAL_HAMBI2610_30680 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.705 |
| pnp | rnr | NGAL_HAMBI2610_00410 | NGAL_HAMBI2610_29330 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.885 |
| pnp | rph | NGAL_HAMBI2610_00410 | NGAL_HAMBI2610_03880 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | TRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.859 |
| pnp | rsmA | NGAL_HAMBI2610_00410 | NGAL_HAMBI2610_31180 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.476 |
| rnd | pnp | NGAL_HAMBI2610_30680 | NGAL_HAMBI2610_00410 | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.705 |
| rnd | rnr | NGAL_HAMBI2610_30680 | NGAL_HAMBI2610_29330 | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.902 |
| rnd | rph | NGAL_HAMBI2610_30680 | NGAL_HAMBI2610_03880 | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | TRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.914 |
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