STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDZ35727.1TRAP transporter solute receptor, DctP family protein. (332 aa)    
Predicted Functional Partners:
DctM
TRAP transporter, DctM subunit.
 
  
 0.937
CDZ39793.1
Putative TRAP-type C4-dicarboxylate transport system, fusion of small and large permease proteins (DctQ/dctM domains).
 
  
 0.859
CDZ42349.1
Putative TRAP-type C4-dicarboxylate transport system, fusion of small and large permease proteins (DctQ/dctM domains).
 
  
 0.856
yiaN
2,3-diketo-l-gulonate trap transporter large permease protein YiaN.
 
  
 0.804
siaT
Sialic acid TRAP transporter permease protein SiaT.
 
  
 0.804
yiaN-2
2,3-diketo-l-gulonate trap transporter large permease protein YiaN.
 
  
 0.804
CDZ32980.1
TRAP transporter, DctM subunit.
 
  
 0.803
CDZ37000.1
TRAP transporter, DctM subunit.
 
  
 0.803
CDZ33119.1
TRAP dicarboxylate transporter, DctM subunit.
 
  
 0.801
CDZ41786.1
TRAP dicarboxylate transporter, DctM subunit.
 
  
 0.773
Your Current Organism:
Neorhizobium galegae officinalis
NCBI taxonomy Id: 323656
Other names: N. galegae bv. officinalis, Neorhizobium galegae biovar officinalis, Neorhizobium galegae bv. officinalis, Rhizobium galegae biovar officinalis, Rhizobium galegae bv. officinalis
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