STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDZ40318.1Alanyl-tRNA synthetase class IIc. (317 aa)    
Predicted Functional Partners:
CDZ35114.1
Phenylalanine--tRNA ligase beta subunit.
  
 
 0.831
CDZ36560.1
WD-repeat family protein.
   
 0.825
CDZ43153.1
Mll0433 protein.
   
 0.825
secD
Protein-export membrane protein SecD.
 
    0.813
CDZ38870.1
Valine--tRNA ligase.
 
  
 0.767
CDZ33606.1
Threonine--tRNA ligase.
  
 
 0.758
CDZ37935.1
Aspartate--tRNA ligase.
 
  
 0.746
CDZ43274.1
Leucine--tRNA ligase.
 
 
 0.742
CDZ35917.1
Isoleucine--tRNA ligase.
  
 
 0.678
CDZ41094.1
Glycine--tRNA ligase alpha subunit.
  
  
 0.654
Your Current Organism:
Neorhizobium galegae officinalis
NCBI taxonomy Id: 323656
Other names: N. galegae bv. officinalis, Neorhizobium galegae biovar officinalis, Neorhizobium galegae bv. officinalis, Rhizobium galegae biovar officinalis, Rhizobium galegae bv. officinalis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.