Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CDZ38707.1 | CDZ39965.1 | NGAL_HAMBI1146_30060 | NGAL_HAMBI1146_36350 | 30S ribosomal protein S2. | 50S ribosomal protein L19. | 0.998 |
CDZ38707.1 | CDZ41767.1 | NGAL_HAMBI1146_30060 | NGAL_HAMBI1146_45490 | 30S ribosomal protein S2. | 30S ribosomal protein S15. | 0.999 |
CDZ38707.1 | CDZ42003.1 | NGAL_HAMBI1146_30060 | NGAL_HAMBI1146_47680 | 30S ribosomal protein S2. | Elongation factor 4. | 0.977 |
CDZ38707.1 | CDZ42777.1 | NGAL_HAMBI1146_30060 | NGAL_HAMBI1146_55440 | 30S ribosomal protein S2. | 50S ribosomal protein L15. | 0.997 |
CDZ38707.1 | CDZ42847.1 | NGAL_HAMBI1146_30060 | NGAL_HAMBI1146_56180 | 30S ribosomal protein S2. | 30S ribosomal protein S9. | 0.999 |
CDZ38707.1 | CDZ42848.1 | NGAL_HAMBI1146_30060 | NGAL_HAMBI1146_56190 | 30S ribosomal protein S2. | 50S ribosomal protein L13. | 0.998 |
CDZ38707.1 | rplC | NGAL_HAMBI1146_30060 | NGAL_HAMBI1146_55630 | 30S ribosomal protein S2. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.997 |
CDZ38707.1 | rplT | NGAL_HAMBI1146_30060 | NGAL_HAMBI1146_11870 | 30S ribosomal protein S2. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.997 |
CDZ38707.1 | rpsG | NGAL_HAMBI1146_30060 | NGAL_HAMBI1146_55670 | 30S ribosomal protein S2. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
CDZ38707.1 | rpsP | NGAL_HAMBI1146_30060 | NGAL_HAMBI1146_36390 | 30S ribosomal protein S2. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
CDZ39965.1 | CDZ38707.1 | NGAL_HAMBI1146_36350 | NGAL_HAMBI1146_30060 | 50S ribosomal protein L19. | 30S ribosomal protein S2. | 0.998 |
CDZ39965.1 | CDZ41767.1 | NGAL_HAMBI1146_36350 | NGAL_HAMBI1146_45490 | 50S ribosomal protein L19. | 30S ribosomal protein S15. | 0.997 |
CDZ39965.1 | CDZ42003.1 | NGAL_HAMBI1146_36350 | NGAL_HAMBI1146_47680 | 50S ribosomal protein L19. | Elongation factor 4. | 0.973 |
CDZ39965.1 | CDZ42777.1 | NGAL_HAMBI1146_36350 | NGAL_HAMBI1146_55440 | 50S ribosomal protein L19. | 50S ribosomal protein L15. | 0.991 |
CDZ39965.1 | CDZ42847.1 | NGAL_HAMBI1146_36350 | NGAL_HAMBI1146_56180 | 50S ribosomal protein L19. | 30S ribosomal protein S9. | 0.997 |
CDZ39965.1 | CDZ42848.1 | NGAL_HAMBI1146_36350 | NGAL_HAMBI1146_56190 | 50S ribosomal protein L19. | 50S ribosomal protein L13. | 0.998 |
CDZ39965.1 | rplC | NGAL_HAMBI1146_36350 | NGAL_HAMBI1146_55630 | 50S ribosomal protein L19. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.996 |
CDZ39965.1 | rplT | NGAL_HAMBI1146_36350 | NGAL_HAMBI1146_11870 | 50S ribosomal protein L19. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.998 |
CDZ39965.1 | rpsG | NGAL_HAMBI1146_36350 | NGAL_HAMBI1146_55670 | 50S ribosomal protein L19. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.998 |
CDZ39965.1 | rpsP | NGAL_HAMBI1146_36350 | NGAL_HAMBI1146_36390 | 50S ribosomal protein L19. | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.998 |
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