STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABB74806.1Secretion protein HlyD. (395 aa)    
Predicted Functional Partners:
ABB74807.1
ABC transporter related protein.
 
 0.920
ABB74805.1
RND efflux system, outer membrane lipoprotein, NodT.
 
   0.906
ABB74808.1
Protein of unknown function DUF214.
 
     0.903
ABB74941.1
Outer membrane efflux protein.
 
   0.668
ABB73997.1
RND efflux system, outer membrane lipoprotein, NodT.
 
   0.553
ABB74155.1
RND efflux system, outer membrane lipoprotein, NodT.
 
   0.546
ABB75135.1
RND efflux system, outer membrane lipoprotein, NodT.
 
   0.545
ABB74256.1
Protein of unknown function DUF214.
  
  
 0.539
ABB74257.1
Protein of unknown function DUF214.
  
  
 0.539
ABB73449.1
Hypothetical protein.
  
     0.536
Your Current Organism:
Nitrosospira multiformis
NCBI taxonomy Id: 323848
Other names: N. multiformis ATCC 25196, Nitrosospira multiformis ATCC 25196, Nitrosospira multiformis C-71, Nitrosospira multiformis NCIMB 11849, Nitrosospira multiformis NI13, Nitrosospira multiformis str. ATCC 25196, Nitrosospira multiformis strain ATCC 25196
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