STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABB75656.1D-Ala-D-Ala carboxypeptidase PBP3, Serine peptidase, MEROPS family S13. (548 aa)    
Predicted Functional Partners:
ABB75286.1
Penicillin-binding protein 6, Serine peptidase, MEROPS family S11; Belongs to the peptidase S11 family.
     
 0.914
ABB74683.1
Ankyrin.
   
 
 0.828
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
  
 0.629
ABB74529.1
ErfK/YbiS/YcfS/YnhG.
     
 0.570
ABB74354.1
RNA polymerase, sigma-24 subunit, RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.493
ABB74277.1
Glycosyl transferase, family 51.
      
 0.447
ABB75657.1
HNH nuclease.
       0.418
flhD
Flagellar transcriptional activator; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family.
  
    0.410
Your Current Organism:
Nitrosospira multiformis
NCBI taxonomy Id: 323848
Other names: N. multiformis ATCC 25196, Nitrosospira multiformis ATCC 25196, Nitrosospira multiformis C-71, Nitrosospira multiformis NCIMB 11849, Nitrosospira multiformis NI13, Nitrosospira multiformis str. ATCC 25196, Nitrosospira multiformis strain ATCC 25196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.