STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shew_0343KEGG: son:SO0474 hypothetical protein. (192 aa)    
Predicted Functional Partners:
Shew_2972
KEGG: son:SO3846 hypothetical protein.
  
     0.690
Shew_0668
KEGG: son:SO3733 hypothetical protein.
  
     0.674
Shew_3360
KEGG: shm:Shewmr7_3517 hypothetical protein.
  
     0.649
Shew_3680
PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_3871 acetyltransferase, GNAT family.
  
     0.581
Shew_0524
PFAM: cytochrome c, class I; KEGG: son:SO4047 cytochrome c family protein.
  
     0.578
Shew_2283
PFAM: porin, Gram-negative type; KEGG: son:SO3060 outer membrane porin, putative.
  
     0.553
Shew_3337
PFAM: protein of unknown function DUF6, transmembrane; KEGG: sfr:Sfri_3644 protein of unknown function DUF6, transmembrane.
  
     0.550
Shew_1972
PFAM: FMN-binding domain protein; KEGG: son:SO1419 hypothetical protein.
  
     0.530
Shew_3151
KEGG: sfr:Sfri_0187 hypothetical protein.
  
     0.526
Shew_2412
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sdn:Sden_1541 tRNA/rRNA methyltransferase (SpoU).
   
    0.483
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.