Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Shew_0652Conserved hypothetical protein; KEGG: ilo:IL0910 Flp/Fap pilin homolog. (91 aa)    
Predicted Functional Partners:
Shew_0651
Hypothetical protein; KEGG: ilo:IL0910 Flp/Fap pilin homolog.
 
  
 
0.950
Shew_0647
Hypothetical protein.
    
  0.937
Shew_0650
Hypothetical protein; KEGG: ilo:IL0909 uncharacterized secreted protein.
 
     0.868
Shew_0646
PFAM: SAF domain; KEGG: bxe:Bxe_B2919 putative Flp pilus assembly CpaB.
 
     0.851
Shew_0644
FHA domain containing protein; PFAM: Forkhead-associated protein; type II secretion system protein E; KEGG: bxe:Bxe_B2921 type II/IV secretion system protein E.
 
     0.839
Shew_0643
PFAM: type II secretion system protein; KEGG: bxe:Bxe_B2922 putative type II secretion system protein F.
 
     0.835
Shew_0642
PFAM: type II secretion system protein; KEGG: bxe:Bxe_B2923 putative type II secretion system protein F.
 
     0.832
Shew_0641
PFAM: protein of unknown function DUF192; KEGG: bba:Bd0471 putative secreted protein.
 
     0.818
Shew_0645
PFAM: type II and III secretion system protein; KEGG: bxe:Bxe_B2920 putative type II and III secretion system outermembrane protein, secretin; Belongs to the bacterial secretin family.
 
     0.804
Shew_0640
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mba:Mbar_A2604 TPR repeat.
 
     0.539
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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