STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shew_0673KEGG: shm:Shewmr7_0904 hypothetical protein. (278 aa)    
Predicted Functional Partners:
Shew_2808
PFAM: type IV pilus assembly PilZ; KEGG: she:Shewmr4_1044 type IV pilus assembly PilZ.
  
     0.773
Shew_1623
KEGG: shm:Shewmr7_1661 hypothetical protein.
  
     0.772
Shew_1631
KEGG: shm:Shewmr7_1811 hypothetical protein.
  
     0.771
Shew_1338
KEGG: shm:Shewmr7_1322 hypothetical protein.
  
     0.767
Shew_3290
PFAM: Sel1 domain protein repeat-containing protein; KEGG: son:SO3936 sodium-type flagellar protein MotX.
  
     0.767
Shew_1919
KEGG: shm:Shewmr7_1941 hypothetical protein.
  
     0.760
Shew_1839
KEGG: sfr:Sfri_1753 hypothetical protein.
  
     0.759
Shew_2110
KEGG: shm:Shewmr7_2233 hypothetical protein.
  
     0.756
Shew_0386
PFAM: Fimbrial assembly family protein; KEGG: she:Shewmr4_3489 hypothetical protein.
  
     0.748
Shew_2434
KEGG: shm:Shewmr7_1464 hypothetical protein.
  
     0.745
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.