Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Shew_0692KEGG: shm:Shewmr7_1015 hypothetical protein. (306 aa)    
Predicted Functional Partners:
Shew_0691
PFAM: protein of unknown function UPF0118; KEGG: ppr:PBPRA1562 hypothetical protein.
       0.773
Shew_0693
Hypothetical protein.
       0.516
Shew_0690
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: she:Shewmr4_0969 endonuclease/exonuclease/phosphatase.
       0.449
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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