STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shew_0775PFAM: regulatory protein, TetR; KEGG: vpa:VPA1299 putative transcriptional regulator. (185 aa)    
Predicted Functional Partners:
Shew_0776
PFAM: bifunctional deaminase-reductase domain protein; KEGG: vpa:VPA1300 hypothetical protein.
 
     0.862
Shew_2657
KEGG: ppr:PBPRB1123 hypothetical protein.
 
     0.672
Shew_3409
KEGG: she:Shewmr4_3064 putative lipoprotein.
  
     0.666
Shew_2389
KEGG: sfr:Sfri_2472 hypothetical protein.
  
     0.558
Shew_3726
PFAM: protein of unknown function DUF1488; KEGG: vpa:VP3032 hypothetical protein.
  
     0.529
Shew_2355
KEGG: sfr:Sfri_0786 hypothetical protein; Belongs to the UPF0319 family.
  
     0.514
Shew_3086
KEGG: sfr:Sfri_3610 hypothetical protein.
  
     0.485
Shew_0482
KEGG: sfr:Sfri_2138 hypothetical protein.
  
     0.468
Shew_2652
KEGG: shm:Shewmr7_2726 hypothetical protein.
  
     0.463
Shew_2972
KEGG: son:SO3846 hypothetical protein.
  
     0.458
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.