Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Shew_0797KEGG: shm:Shewmr7_3210 hypothetical protein. (472 aa)    
Predicted Functional Partners:
Shew_2524
KEGG: shm:Shewmr7_2577 decaheme cytochrome c.
 
   
 0.733
Shew_2522
KEGG: shm:Shewmr7_2577 decaheme cytochrome c.
 
   
 0.731
Shew_0918
KEGG: sfr:Sfri_0913 decaheme cytochrome c.
  
     0.712
Shew_2521
KEGG: shm:Shewmr7_2576 decaheme cytochrome c MtrF.
  
     0.705
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.698
Shew_2466
KEGG: son:SO0497 hypothetical protein.
  
     0.690
Shew_2527
KEGG: shm:Shewmr7_2580 outer membrane protein precursor MtrB.
  
     0.686
Shew_3162
KEGG: son:SO0404 hypothetical protein.
  
     0.680
Shew_2520
KEGG: she:Shewmr4_2507 outer membrane protein, putative.
  
     0.676
ccmC
Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
  
  
 0.655
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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