STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shew_0806PFAM: MltA-interacting MipA family protein; KEGG: shm:Shewmr7_3202 MltA-interacting MipA family protein. (281 aa)    
Predicted Functional Partners:
Shew_0803
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_0818 periplasmic sensor signal transduction histidine kinase.
 
     0.804
Shew_0804
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: shm:Shewmr7_3204 two component transcriptional regulator, winged helix family.
       0.773
Shew_0805
KEGG: she:Shewmr4_0820 hypothetical protein.
       0.773
Shew_1113
PFAM: tryptophan halogenase; KEGG: shm:Shewmr7_3023 tryptophan halogenase.
 
     0.619
Shew_1873
KEGG: shm:Shewmr7_2109 glucan 1,4-alpha-glucosidase; TIGRFAM: glucan 1,4-alpha-glucosidase; PFAM: glycoside hydrolase 15-related.
  
     0.615
Shew_2293
PFAM: tryptophan halogenase; KEGG: shm:Shewmr7_3023 tryptophan halogenase.
 
     0.579
Shew_3504
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; KEGG: shm:Shewmr7_0324 TPR repeat-containing protein.
  
     0.548
Shew_1112
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_3024 TonB-dependent receptor.
  
     0.546
Shew_3782
PFAM: ABC-2 type transporter; KEGG: sfr:Sfri_3979 ABC-2 type transporter.
  
     0.533
Shew_1870
Transcriptional regulator, LacI family; PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: shm:Shewmr7_1847 transcriptional regulator, LacI family.
  
    0.522
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.