STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shew_0807PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: shm:Shewmr7_3201 LPXTG-motif cell wall anchor domain; Belongs to the peptidase S8 family. (1705 aa)    
Predicted Functional Partners:
Shew_0936
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: son:SO3800 serine protease, subtilase family.
  
     0.653
Shew_2466
KEGG: son:SO0497 hypothetical protein.
  
 
   0.633
Shew_2522
KEGG: shm:Shewmr7_2577 decaheme cytochrome c.
 
     0.625
Shew_0918
KEGG: sfr:Sfri_0913 decaheme cytochrome c.
  
     0.624
Shew_2524
KEGG: shm:Shewmr7_2577 decaheme cytochrome c.
 
     0.622
Shew_3162
KEGG: son:SO0404 hypothetical protein.
  
     0.597
Shew_2395
KEGG: son:SO2917 hypothetical protein.
  
     0.591
Shew_2521
KEGG: shm:Shewmr7_2576 decaheme cytochrome c MtrF.
  
     0.591
Shew_0479
PFAM: HipA domain protein; KEGG: she:Shewmr4_3395 HipA domain protein.
  
    0.588
Shew_0759
KEGG: sfr:Sfri_3633 cytochrome c, putative.
  
     0.564
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.