STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shew_0847PFAM: Rh family protein/ammonium transporter; KEGG: shm:Shewmr7_0592 Rh family protein/ammonium transporter. (416 aa)    
Predicted Functional Partners:
Shew_0846
PFAM: nitrogen regulatory protein P-II; KEGG: sfr:Sfri_0623 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
 
 0.999
Shew_1110
PFAM: nitrogen regulatory protein P-II; KEGG: sdn:Sden_2711 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
 
 0.997
Shew_1499
KEGG: sfr:Sfri_2273 putative nitrogen regulatory protein P-II.
  
 
 0.942
Shew_1032
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: she:Shewmr4_2872 glutamate synthase (ferredoxin).
 
  
 0.920
Shew_3560
Signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: shm:Shewmr7_3763 signal transduction histidine kinase, nitrogen specific, NtrB.
 
 
 0.775
Shew_3416
TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; PAS fold-4 domain protein; KEGG: son:SO0437 sensory box protein.
      0.702
Shew_3125
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: shm:Shewmr7_3409 diguanylate cyclase/phosphodiesterase.
      0.648
Shew_1822
Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 
 0.548
hldE
D-beta-D-heptose 1-phosphate adenylyltransferase; Catalyzes the phosphorylation of D-glycero-D-manno-heptose 7- phosphate at the C-1 position to selectively form D-glycero-beta-D- manno-heptose-1,7-bisphosphate; In the C-terminal section; belongs to the cytidylyltransferase family.
      
 0.539
Shew_0763
Putative PAS/PAC sensor protein; PFAM: PAS fold domain protein; SMART: PAS domain containing protein; KEGG: shm:Shewmr7_3237 putative PAS/PAC sensor protein.
  
 
 0.531
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.