Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Shew_0963KEGG: she:Shewmr4_2930 hypothetical protein. (239 aa)    
Predicted Functional Partners:
Shew_1114
PFAM: SapC family protein; KEGG: pha:PSHAa1142 hypothetical protein.
  
     0.621
Shew_3246
KEGG: sfr:Sfri_3533 hypothetical protein.
  
     0.607
Shew_1112
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_3024 TonB-dependent receptor.
  
     0.560
Shew_0964
PFAM: protein of unknown function DUF861, cupin_3; KEGG: shm:Shewmr7_3011 protein of unknown function DUF861, cupin_3.
  
    0.523
Shew_2296
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_2604 TonB-dependent receptor.
  
     0.493
Shew_0273
KEGG: son:SO1411 hypothetical protein.
  
     0.466
Shew_1239
PFAM: PepSY-associated TM helix domain protein; KEGG: shm:Shewmr7_1218 PepSY-associated TM helix domain protein.
  
     0.451
Shew_2612
KEGG: cps:CPS_3418 hypothetical protein.
  
     0.437
Shew_1113
PFAM: tryptophan halogenase; KEGG: shm:Shewmr7_3023 tryptophan halogenase.
  
     0.424
Shew_0965
TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: she:Shewmr4_2928 methylmalonate-semialdehyde dehydrogenase.
       0.415
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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