Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Shew_0983PFAM: amidohydrolase; KEGG: mba:Mbar_A1663 hypothetical protein. (445 aa)    
Predicted Functional Partners:
Shew_0984
PFAM: beta-lactamase; KEGG: cps:CPS_2086 putative beta-lactamase.
 
     0.794
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.571
Shew_2900
PFAM: protein of unknown function DUF1704; KEGG: vvy:VVA0030 hypothetical protein.
  
  
 0.526
Shew_2280
PFAM: phenylalanine/histidine ammonia-lyase; KEGG: son:SO3057 Pal/histidase family protein.
  
  
 0.525
Shew_3517
PFAM: phenylalanine/histidine ammonia-lyase; KEGG: shm:Shewmr7_3682 histidine ammonia-lyase.
  
  
 0.525
hutH
KEGG: shm:Shewmr7_0095 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.
  
  
 0.525
Shew_0982
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: vpa:VP1365 hypothetical protein.
 
     0.523
Shew_0985
PFAM: phospholipase D/Transphosphatidylase; KEGG: aci:ACIAD1881 putative phospholipase D protein.
 
     0.481
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.