STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shew_1663KEGG: she:Shewmr4_1643 hypothetical protein. (173 aa)    
Predicted Functional Partners:
Shew_2422
KEGG: she:Shewmr4_1410 hypothetical protein.
  
     0.673
Shew_1664
KEGG: ppr:PBPRB1101 hypothetical protein.
       0.646
cobB
PFAM: Silent information regulator protein Sir2; KEGG: she:Shewmr4_1642 silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
       0.611
Shew_2481
PFAM: porin, Gram-negative type; KEGG: she:Shewmr4_2468 porin, gram-negative type.
  
     0.593
Shew_2283
PFAM: porin, Gram-negative type; KEGG: son:SO3060 outer membrane porin, putative.
  
     0.556
Shew_1620
PFAM: S-adenosylmethionine decarboxylase; KEGG: sfr:Sfri_1699 adenosylmethionine decarboxylase.
  
     0.546
Shew_0432
KEGG: shm:Shewmr7_3479 hypothetical protein.
  
     0.489
Shew_1665
PFAM: peptidase S51, dipeptidase E; KEGG: sbo:SBO_4042 peptidase E; Belongs to the peptidase S51 family.
       0.459
rsmH
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
     0.456
Shew_2189
KEGG: shm:Shewmr7_2255 alpha/beta hydrolase fold.
 
     0.408
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.