STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shew_1688PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_0392 TonB-dependent receptor, plug. (710 aa)    
Predicted Functional Partners:
Shew_2774
TIGRFAM: TonB family protein; KEGG: son:SO4043 TonB domain protein.
 
 
 0.779
Shew_2474
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.768
Shew_3097
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_3717 TonB-dependent siderophore receptor.
 
  
 0.748
Shew_2995
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.719
Shew_1880
KEGG: sfr:Sfri_1916 hypothetical protein.
  
 
 0.700
Shew_3841
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_3922 TonB-dependent siderophore receptor.
  
  
 0.675
Shew_0314
KEGG: sdn:Sden_0384 hypothetical protein; TIGRFAM: putative outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; SMART: Cadherin.
   
 
 0.639
Shew_0638
PFAM: cell surface receptor IPT/TIG domain protein; KEGG: hwa:HQ3601A cell surface calcium-binding acidic-repeat protein.
    
 
 0.638
Shew_1010
KEGG: she:Shewmr4_2895 general secretion pathway protein B.
    
 
 0.638
Shew_1181
PFAM: PepSY-associated TM helix domain protein; KEGG: cps:CPS_2723 putative iron-regulated membrane protein.
 
   
 0.616
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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