STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shew_1978KEGG: vpa:VP1677 hypothetical protein. (304 aa)    
Predicted Functional Partners:
Shew_3050
KEGG: rso:RSc0630 hypothetical protein.
 
    0.712
Shew_1980
KEGG: vpa:VP1679 hypothetical protein.
 
     0.697
Shew_1979
KEGG: vpa:VP1678 putative dienelactone hydrolase and related enzymes.
 
    
0.627
Shew_3051
PFAM: Cupin 2, conserved barrel domain protein; KEGG: rfr:Rfer_2441 carboxymuconolactone decarboxylase.
 
     0.561
Shew_1981
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; KEGG: pfl:PFL_2378 transcriptional regulator, AraC family.
 
     0.514
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.