STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shew_2004KEGG: vfi:VF0709 hypothetical protein. (91 aa)    
Predicted Functional Partners:
Shew_1790
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: she:Shewmr4_2203 periplasmic sensor signal transduction histidine kinase.
  
     0.614
Shew_2006
PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_3397 acetyltransferase, GNAT family.
 
     0.522
Shew_2412
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sdn:Sden_1541 tRNA/rRNA methyltransferase (SpoU).
  
     0.511
Shew_2005
PFAM: FAD dependent oxidoreductase; KEGG: sfr:Sfri_0489 FAD dependent oxidoreductase.
       0.510
Shew_2453
KEGG: sdn:Sden_1416 hypothetical protein.
  
     0.499
Shew_1518
KEGG: sdn:Sden_0883 hypothetical protein.
  
     0.471
Shew_0231
PFAM: protein of unknown function DUF1212; KEGG: son:SO0308 hypothetical protein.
  
     0.455
Shew_0377
PFAM: Sporulation domain protein; KEGG: sfr:Sfri_3763 sporulation domain protein.
  
     0.449
Shew_2003
Hypothetical protein.
       0.443
Shew_0955
PFAM: peptidase M24; KEGG: sfr:Sfri_3046 peptidase M24; Belongs to the peptidase M24B family.
  
     0.438
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.