Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Shew_2005PFAM: FAD dependent oxidoreductase; KEGG: sfr:Sfri_0489 FAD dependent oxidoreductase. (443 aa)    
Predicted Functional Partners:
Shew_2006
PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_3397 acetyltransferase, GNAT family.
 
     0.798
Shew_0972
PFAM: glutamine synthetase, catalytic region; KEGG: shm:Shewmr7_3001 glutamate--ammonia ligase.
 
  
 0.680
Shew_0729
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ppr:PBPRA1421 putative NADH oxidase.
   
 
 0.527
Shew_0971
PFAM: peptidase C26; KEGG: sfr:Sfri_3012 peptidase C26.
 
  
 0.527
Shew_2004
KEGG: vfi:VF0709 hypothetical protein.
       0.510
Shew_0966
PFAM: aminotransferase class-III; KEGG: she:Shewmr4_2927 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.499
Shew_2532
Peptidase C26; PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: pen:PSEEN2659 glutamine amidopeptidase (class I).
 
  
 0.485
Shew_3172
KEGG: cps:CPS_4664 4-aminobutyrate aminotransferase; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.467
gcvT
Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.
  
 
 0.453
Shew_2007
KEGG: sdn:Sden_0075 hypothetical protein.
       0.424
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.