Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Shew_2006PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_3397 acetyltransferase, GNAT family. (188 aa)    
Predicted Functional Partners:
Shew_2005
PFAM: FAD dependent oxidoreductase; KEGG: sfr:Sfri_0489 FAD dependent oxidoreductase.
 
     0.798
Shew_0875
KEGG: sdn:Sden_2921 hypothetical protein.
  
     0.766
Shew_2650
KEGG: son:SO1612 hypothetical protein.
  
     0.761
Shew_2757
KEGG: shm:Shewmr7_2785 hypothetical protein.
  
     0.755
Shew_3379
KEGG: she:Shewmr4_3557 hypothetical protein.
  
     0.725
Shew_1556
KEGG: shm:Shewmr7_1674 hypothetical protein.
  
     0.716
seqA
SeqA family protein; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated.
  
     0.679
Shew_2395
KEGG: son:SO2917 hypothetical protein.
  
     0.660
Shew_2381
PFAM: RDD domain containing protein; KEGG: she:Shewmr4_1501 RDD domain containing protein.
  
     0.619
Shew_3546
KEGG: shm:Shewmr7_3709 hypothetical protein.
  
     0.566
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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