STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shew_2018DsrC family protein; Part of a sulfur-relay system. (107 aa)    
Predicted Functional Partners:
Shew_2015
PFAM: DsrE family protein; KEGG: she:Shewmr4_1972 DsrE family protein.
 
 
 0.995
Shew_2016
PFAM: DsrE family protein; KEGG: shm:Shewmr7_2005 DsrE family protein; Belongs to the DsrF/TusC family.
 
  
 0.963
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
   
 0.936
Shew_2017
KEGG: sdn:Sden_1806 DsrH like protein.
  
 
 0.931
Shew_2014
PFAM: protein of unknown function UPF0005; KEGG: shm:Shewmr7_2003 protein of unknown function UPF0005; Belongs to the BI1 family.
     
 0.490
Shew_1550
PFAM: FAD linked oxidase domain protein; KEGG: son:SO2643 oxidoreductase, FAD-binding, putative.
   
 
 0.427
Shew_3136
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: she:Shewmr4_2735 FAD linked oxidase domain protein.
   
 
 0.427
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
Server load: medium (72%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.