STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shew_2136Carboxylesterase; PFAM: phospholipase/Carboxylesterase; KEGG: sdn:Sden_2138 carboxylesterase. (224 aa)    
Predicted Functional Partners:
Shew_3787
TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: shm:Shewmr7_0066 molybdenum cofactor synthesis domain.
 
    0.683
Shew_2137
PFAM: Glutathione S-transferase, C-terminal domain; KEGG: ppr:PBPRA2730 putative glutathione S-transferase.
       0.526
Shew_1978
KEGG: vpa:VP1677 hypothetical protein.
     
 0.406
Shew_1979
KEGG: vpa:VP1678 putative dienelactone hydrolase and related enzymes.
     
 0.406
Shew_2712
PFAM: peptidase S15; KEGG: pae:PA3829 hypothetical protein.
     
 0.406
Shew_3047
KEGG: rso:RSc0206 hypothetical signal peptide protein.
     
 0.406
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.