STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shew_2139PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: sdn:Sden_2140 peptidylprolyl isomerase, FKBP-type. (160 aa)    
Predicted Functional Partners:
Shew_1759
TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: she:Shewmr4_1816 hydrogenase accessory protein HypB.
    
 
 0.810
Shew_1101
PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: shm:Shewmr7_3037 peptidylprolyl isomerase, FKBP-type.
  
   
 0.766
Shew_2140
KEGG: shm:Shewmr7_1781 hypothetical protein.
       0.566
Shew_2138
KEGG: vch:VCA0579 hypothetical protein.
       0.531
rpsJ
SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
    0.512
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.