Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Shew_2147KEGG: she:Shewmr4_2279 hypothetical protein. (308 aa)    
Predicted Functional Partners:
Shew_2816
PFAM: nucleoside-specific channel-forming protein, Tsx; KEGG: shm:Shewmr7_1101 nucleoside-specific channel-forming protein, Tsx.
  
     0.587
Shew_2148
PFAM: protein of unknown function DUF307; KEGG: son:SO1977 hypothetical protein.
       0.471
Shew_2972
KEGG: son:SO3846 hypothetical protein.
  
     0.466
Shew_2539
PFAM: branched-chain amino acid transport; KEGG: she:Shewmr4_2529 branched-chain amino acid transport.
  
     0.459
Shew_0386
PFAM: Fimbrial assembly family protein; KEGG: she:Shewmr4_3489 hypothetical protein.
 
     0.454
Shew_2001
KEGG: sfr:Sfri_1941 hypothetical protein.
  
     0.433
Shew_3276
KEGG: vpa:VP2733 hypothetical protein.
  
     0.422
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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