Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Shew_2298KEGG: sde:Sde_2360 putative alpha-glucosidase. (647 aa)    
Predicted Functional Partners:
Shew_1873
KEGG: shm:Shewmr7_2109 glucan 1,4-alpha-glucosidase; TIGRFAM: glucan 1,4-alpha-glucosidase; PFAM: glycoside hydrolase 15-related.
  
  
 0.973
Shew_1876
Alpha-glucosidase; KEGG: sfr:Sfri_1777 alpha-glucosidase.
  
  
 
0.924
Shew_1889
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: son:SO2213 alpha-glucosidase.
 
  
 0.920
Shew_1167
KEGG: son:SO1493 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77.
    
 0.903
Shew_1428
N-acetylglucosamine kinase; PFAM: ROK family protein; KEGG: sfr:Sfri_1321 ROK family protein.
     
  0.900
Shew_1887
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: shm:Shewmr7_2211 alpha amylase, catalytic region; Belongs to the glycosyl hydrolase 13 family.
 
   
 0.713
Shew_1874
PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_1870 major facilitator superfamily MFS_1.
 
     0.710
Shew_2286
TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pha:PSHAa1768 sodium/hexose cotransport protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.683
Shew_1116
PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: she:Shewmr4_2935 ATPase, BadF/BadG/BcrA/BcrD type.
      
 0.565
Shew_2296
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: shm:Shewmr7_2604 TonB-dependent receptor.
 
     0.564
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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