STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shew_2447KEGG: shm:Shewmr7_2509 hypothetical protein. (118 aa)    
Predicted Functional Partners:
lapA
Protein of unknown function DUF1049; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.758
Shew_1627
PFAM: protein of unknown function UPF0227; KEGG: shm:Shewmr7_1806 protein of unknown function UPF0227; Belongs to the UPF0227 family.
  
     0.736
Shew_2413
KEGG: sdn:Sden_1540 hypothetical protein.
  
     0.727
Shew_3283
Restart primosome assembly protein PriB; KEGG: sdn:Sden_0516 single-strand binding protein/primosomal replication protein N.
  
     0.714
zapC
Protein of unknown function DUF1379; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ.
  
     0.604
Shew_2486
KEGG: she:Shewmr4_2473 hypothetical protein; Belongs to the UPF0319 family.
  
     0.597
Shew_3569
PFAM: protein of unknown function, Spy-related; KEGG: she:Shewmr4_0253 protein of unknown function, Spy-related.
  
     0.597
Shew_0546
PFAM: protein of unknown function DUF1249; KEGG: she:Shewmr4_3234 protein of unknown function DUF1249.
  
     0.594
Shew_2283
PFAM: porin, Gram-negative type; KEGG: son:SO3060 outer membrane porin, putative.
  
     0.591
Shew_3162
KEGG: son:SO0404 hypothetical protein.
  
     0.583
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.