Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Shew_2500PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2554 binding-protein-dependent transport systems inner membrane component. (296 aa)    
Predicted Functional Partners:
Shew_2502
PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: she:Shewmr4_2488 ABC transporter-related protein.
 
 0.999
Shew_2501
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-related protein; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; KEGG: she:Shewmr4_2487 oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
  
 0.998
Shew_2499
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: shm:Shewmr7_2553 binding-protein-dependent transport systems inner membrane component.
  
 0.986
Shew_2498
PFAM: extracellular solute-binding protein, family 5; KEGG: she:Shewmr4_2484 extracellular solute-binding protein, family 5.
 
  
 0.982
Shew_2495
PFAM: phage shock B family protein; KEGG: son:SO1808 phage shock protein B.
 
     0.572
Shew_2496
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: shm:Shewmr7_2550 phage shock protein A, PspA.
 
     0.568
Shew_2497
Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: shm:Shewmr7_2551 transcriptional regulator, fis family.
       0.550
Shew_2494
PFAM: PspC domain protein; KEGG: sfr:Sfri_2576 phage shock protein C, PspC.
       0.512
fabV
Short-chain alcohol dehydrogenase; Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon- carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP); Belongs to the TER reductase family.
       0.503
Shew_2493
PFAM: protein of unknown function DUF463, YcjX family protein; KEGG: sfr:Sfri_2575 protein of unknown function DUF463, YcjX family protein.
       0.439
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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