STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shew_2519TIGRFAM: cytochrome C family protein; KEGG: shm:Shewmr7_2574 cytochrome c family protein. (322 aa)    
Predicted Functional Partners:
Shew_2521
KEGG: shm:Shewmr7_2576 decaheme cytochrome c MtrF.
 
 
 0.974
Shew_2520
KEGG: she:Shewmr4_2507 outer membrane protein, putative.
 
 
 0.963
Shew_2527
KEGG: shm:Shewmr7_2580 outer membrane protein precursor MtrB.
 
 
 0.936
Shew_2522
KEGG: shm:Shewmr7_2577 decaheme cytochrome c.
 
     0.831
Shew_2525
KEGG: son:SO1778 decaheme cytochrome c.
    
 
 0.823
Shew_0918
KEGG: sfr:Sfri_0913 decaheme cytochrome c.
 
 
 0.801
Shew_2524
KEGG: shm:Shewmr7_2577 decaheme cytochrome c.
 
     0.675
Shew_3162
KEGG: son:SO0404 hypothetical protein.
  
     0.602
Shew_0759
KEGG: sfr:Sfri_3633 cytochrome c, putative.
  
     0.570
nrfA
Respiratory nitrite reductase (cytochrome; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
 
 
 0.556
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.