Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Shew_2661 | Shew_2662 | KEGG: vpa:VPA0557 hypothetical protein. | PFAM: Cupin 2, conserved barrel domain protein; KEGG: sdn:Sden_3023 cupin 2, conserved barrel. | 0.493 |
Shew_2662 | Shew_2661 | PFAM: Cupin 2, conserved barrel domain protein; KEGG: sdn:Sden_3023 cupin 2, conserved barrel. | KEGG: vpa:VPA0557 hypothetical protein. | 0.493 |
Shew_2662 | Shew_2663 | PFAM: Cupin 2, conserved barrel domain protein; KEGG: sdn:Sden_3023 cupin 2, conserved barrel. | TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; elongation factor G, domain IV; KEGG: hch:HCH_03648 translation elongation factors (GTPase). | 0.438 |
Shew_2662 | Shew_2711 | PFAM: Cupin 2, conserved barrel domain protein; KEGG: sdn:Sden_3023 cupin 2, conserved barrel. | Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; Cupin 2, conserved barrel domain protein; KEGG: rru:Rru_A0140 transcriptional regulator, AraC family. | 0.485 |
Shew_2663 | Shew_2662 | TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; elongation factor G, domain IV; KEGG: hch:HCH_03648 translation elongation factors (GTPase). | PFAM: Cupin 2, conserved barrel domain protein; KEGG: sdn:Sden_3023 cupin 2, conserved barrel. | 0.438 |
Shew_2711 | Shew_2662 | Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; Cupin 2, conserved barrel domain protein; KEGG: rru:Rru_A0140 transcriptional regulator, AraC family. | PFAM: Cupin 2, conserved barrel domain protein; KEGG: sdn:Sden_3023 cupin 2, conserved barrel. | 0.485 |