Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Shew_3085Lipocalin family protein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids. (170 aa)    
Predicted Functional Partners:
Shew_2400
Domain of unknown function DUF1731; PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; domain of unknown function DUF1731; KEGG: she:Shewmr4_1483 hypothetical protein.
     0.660
Shew_1831
PFAM: SpoVR family protein; KEGG: sdn:Sden_1636 SpoVR.
   
    0.536
Shew_1483
PFAM: protein of unknown function DUF1365; KEGG: sdn:Sden_3369 protein of unknown function DUF1365.
 
     0.446
Shew_1478
PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: cps:CPS_1379 hypothetical protein.
 
    0.427
Shew_2554
PFAM: OmpW family protein; KEGG: shm:Shewmr7_2668 OmpW family protein.
  
   
 0.408
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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