STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shew_3151KEGG: sfr:Sfri_0187 hypothetical protein. (1064 aa)    
Predicted Functional Partners:
Shew_1972
PFAM: FMN-binding domain protein; KEGG: son:SO1419 hypothetical protein.
  
     0.773
Shew_0277
PFAM: regulatory protein, TetR; KEGG: son:SO1415 transcriptional regulator, TetR family.
  
     0.771
Shew_0747
KEGG: shm:Shewmr7_3256 GGDEF domain protein.
  
     0.771
Shew_0954
PFAM: ROK family protein; KEGG: son:SO1389 ROK family protein.
  
     0.770
Shew_0577
Putative signal transduction protein; PFAM: HDOD; KEGG: son:SO0615 hypothetical protein.
  
     0.767
Shew_1815
KEGG: shm:Shewmr7_1610 hypothetical protein.
  
     0.762
Shew_2472
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: shm:Shewmr7_2528 diguanylate cyclase.
  
     0.761
Shew_2283
PFAM: porin, Gram-negative type; KEGG: son:SO3060 outer membrane porin, putative.
  
     0.754
Shew_3358
KEGG: son:SO0518 outer membrane efflux family protein, putative.
  
     0.752
Shew_3361
KEGG: sdn:Sden_3283 hypothetical protein.
  
     0.750
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.