Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Shew_3166PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: son:SO1044 amino acid ABC transporter, periplasmic amino acid-binding protein. (242 aa)    
Predicted Functional Partners:
Shew_3165
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: she:Shewmr4_3054 polar amino acid ABC transporter, inner membrane subunit.
 0.999
Shew_3164
PFAM: ABC transporter-related protein; SMART: AAA ATPase; KEGG: shm:Shewmr7_0917 ABC transporter-related protein.
 
 0.993
carA
TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase, small chain; KEGG: she:Shewmr4_0965 carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family.
   
  
 0.578
Shew_2280
PFAM: phenylalanine/histidine ammonia-lyase; KEGG: son:SO3057 Pal/histidase family protein.
      
 0.572
carB
TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: son:SO1142 carbamoyl-phosphate synthase large chain; Belongs to the CarB family.
   
  
 0.464
Shew_2694
PFAM: Propeptide, PepSY amd peptidase M4; KEGG: sfr:Sfri_1133 propeptide, PepSY amd peptidase M4.
   
   0.419
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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