Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Shew_3232PFAM: peptidase M50; KEGG: she:Shewmr4_3275 peptidase M50. (392 aa)    
Predicted Functional Partners:
Shew_1584
PFAM: nucleoside recognition domain protein; KEGG: she:Shewmr4_1666 nucleoside recognition domain protein.
  
  
 0.805
Shew_3231
PFAM: protein of unknown function DUF342; KEGG: shm:Shewmr7_0674 protein of unknown function DUF342.
       0.648
Shew_2722
KEGG: sdn:Sden_2403 hypothetical protein.
 
     0.573
Shew_3177
KEGG: son:SO1504 hypothetical protein.
  
     0.541
Shew_0627
KEGG: she:Shewmr4_3110 hypothetical protein.
  
     0.536
Shew_1241
TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3403 ribosomal subunit interface protein.
 
     0.519
Shew_2690
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cps:CPS_1347 TonB-dependent receptor.
  
     0.426
Shew_0841
PFAM: uncharacterized conserved protein UCP006287; KEGG: son:SO3983 hypothetical protein; Belongs to the UPF0231 family.
  
     0.405
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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