Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene co-occurrence
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[Homology]
Score
Shew_3263PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: she:Shewmr4_0579 serine/threonine protein kinase. (611 aa)    
Predicted Functional Partners:
Shew_0644
FHA domain containing protein; PFAM: Forkhead-associated protein; type II secretion system protein E; KEGG: bxe:Bxe_B2921 type II/IV secretion system protein E.
   
 
 0.708
Shew_1925
PFAM: dehydrogenase, E1 component; KEGG: shm:Shewmr7_1947 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring).
 
     0.615
Shew_1926
PFAM: Transketolase, central region; Transketolase domain protein; KEGG: shm:Shewmr7_1948 transketolase, central region.
 
     0.517
Shew_2381
PFAM: RDD domain containing protein; KEGG: she:Shewmr4_1501 RDD domain containing protein.
  
     0.514
Shew_0875
KEGG: sdn:Sden_2921 hypothetical protein.
  
     0.491
Shew_3262
KEGG: shm:Shewmr7_3450 hypothetical protein.
       0.487
Shew_1927
PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: shm:Shewmr7_1949 catalytic domain of components of various dehydrogenase complexes.
 
     0.486
Shew_2399
PFAM: dihydroneopterin aldolase; KEGG: sfr:Sfri_2558 dihydroneopterin aldolase.
 
    0.480
Shew_1452
DNA-3-methyladenine glycosylase II / DNA-O6-methylguanine--protein-cysteine S-methyltransferase; PFAM: helix-turn-helix- domain containing protein, AraC type; Ada, metal-binding domain protein; AlkA domain protein; SMART: HhH-GPD family protein; KEGG: she:Shewmr4_1367 transcriptional regulator, AraC family.
 
    0.473
Shew_1199
PFAM: protein of unknown function DUF416; KEGG: son:SO3458 hypothetical protein.
  
     0.461
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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