STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shew_3379KEGG: she:Shewmr4_3557 hypothetical protein. (179 aa)    
Predicted Functional Partners:
Shew_3380
Sec-independent protein translocase TatD; PFAM: TatD-related deoxyribonuclease; KEGG: shm:Shewmr7_0398 TatD-related deoxyribonuclease.
     
 0.872
Shew_3381
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: son:SO4207 GGDEF domain protein.
     
 0.858
Shew_2650
KEGG: son:SO1612 hypothetical protein.
  
     0.773
Shew_2757
KEGG: shm:Shewmr7_2785 hypothetical protein.
  
     0.772
Shew_0875
KEGG: sdn:Sden_2921 hypothetical protein.
  
     0.770
Shew_1127
KEGG: shm:Shewmr7_1255 hypothetical protein.
  
     0.770
Shew_1556
KEGG: shm:Shewmr7_1674 hypothetical protein.
  
     0.768
Shew_2395
KEGG: son:SO2917 hypothetical protein.
  
     0.756
Shew_2381
PFAM: RDD domain containing protein; KEGG: she:Shewmr4_1501 RDD domain containing protein.
  
     0.731
Shew_2006
PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_3397 acetyltransferase, GNAT family.
  
     0.725
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.