STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shew_3519Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). (257 aa)    
Predicted Functional Partners:
Shew_3516
PFAM: glycosyl transferase, family 2; lipid A biosynthesis acyltransferase; KEGG: she:Shewmr4_0345 glycosyl transferase, family 2.
 
    0.954
Shew_3520
KEGG: she:Shewmr4_0341 hypothetical protein.
 
    0.953
Shew_3518
KEGG: shm:Shewmr7_3683 thioesterase superfamily protein.
 
     0.952
Shew_3521
Tryptophan halogenase; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: shm:Shewmr7_3686 monooxygenase, FAD-binding protein.
 
     0.952
Shew_3513
KEGG: son:SO4370 hypothetical protein.
 
   
 0.951
Shew_3509
KEGG: shm:Shewmr7_3674 hypothetical protein.
 
   
 0.949
acpP-2
Phosphopantetheine-binding; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
 
    0.949
Shew_3511
KEGG: shm:Shewmr7_3676 acyl carrier protein, putative.
 
    0.948
Shew_3514
KEGG: shm:Shewmr7_3679 hypothetical protein.
 
     0.948
Shew_3510
PFAM: phospholipid/glycerol acyltransferase; KEGG: shm:Shewmr7_3675 phospholipid/glycerol acyltransferase.
 
     0.947
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.