Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Shew_3531TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter, transmembrane; KEGG: sfr:Sfri_0262 aromatic amino acid transporter. (418 aa)    
Predicted Functional Partners:
plsB
PFAM: phospholipid/glycerol acyltransferase; KEGG: shm:Shewmr7_3861 glycerol-3-phosphate O-acyltransferase; Belongs to the GPAT/DAPAT family.
       0.778
Shew_1076
TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: sdn:Sden_2743 Trp repressor.
 
   
 0.726
Shew_2521
KEGG: shm:Shewmr7_2576 decaheme cytochrome c MtrF.
  
   
 0.639
Shew_3540
PFAM: NapC/NirT cytochrome c domain protein; KEGG: son:SO4591 tetraheme cytochrome c.
  
   
 0.634
Shew_2527
KEGG: shm:Shewmr7_2580 outer membrane protein precursor MtrB.
  
   
 0.629
Shew_1489
PFAM: protein of unknown function DUF991; KEGG: sdn:Sden_2377 protein of unknown function DUF991.
  
     0.626
Shew_0910
KEGG: sdy:SDY_1697 hypothetical protein.
  
     0.583
Shew_0739
PFAM: aromatic amino acid permease; KEGG: shm:Shewmr7_3262 amino acid transporter, transmembrane.
  
   
 0.573
Shew_2264
PFAM: protein of unknown function DUF1097; KEGG: son:SO3047 hypothetical protein.
  
     0.573
Shew_2525
KEGG: son:SO1778 decaheme cytochrome c.
      
 0.572
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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