Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Shew_3537KEGG: son:SOA0156 hypothetical protein. (135 aa)    
Predicted Functional Partners:
Shew_3538
KEGG: sfr:Sfri_0591 hypothetical protein.
  
    0.539
Shew_3536
Hypothetical protein; KEGG: she:Shewmr4_3781 copper-transporting ATPase domain protein.
  
    0.440
Shew_3535
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: she:Shewmr4_3782 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.409
Shew_0678
KEGG: shm:Shewmr7_0906 protoporphyrinogen oxidase.
   
    0.400
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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