STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Shew_3680PFAM: GCN5-related N-acetyltransferase; KEGG: she:Shewmr4_3871 acetyltransferase, GNAT family. (153 aa)    
Predicted Functional Partners:
Shew_3679
Conserved hypothetical integral membrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.
 
    0.673
Shew_0482
KEGG: sfr:Sfri_2138 hypothetical protein.
  
     0.619
Shew_0343
KEGG: son:SO0474 hypothetical protein.
  
     0.581
Shew_3162
KEGG: son:SO0404 hypothetical protein.
  
     0.526
Shew_1894
Conserved hypothetical protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
  
     0.498
Shew_2657
KEGG: ppr:PBPRB1123 hypothetical protein.
  
     0.453
Shew_2486
KEGG: she:Shewmr4_2473 hypothetical protein; Belongs to the UPF0319 family.
  
     0.448
Shew_0014
KEGG: she:Shewmr4_0012 hypothetical protein.
  
    0.440
Shew_0776
PFAM: bifunctional deaminase-reductase domain protein; KEGG: vpa:VPA1300 hypothetical protein.
 
     0.437
Shew_2355
KEGG: sfr:Sfri_0786 hypothetical protein; Belongs to the UPF0319 family.
  
     0.430
Your Current Organism:
Shewanella loihica
NCBI taxonomy Id: 323850
Other names: S. loihica PV-4, Shewanella loihica PV-4, Shewanella loihica str. PV-4, Shewanella loihica strain PV-4, Shewanella sp. PV-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.