STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS99022.1PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_4909 xylose isomerase domain-containing protein. (298 aa)    
Predicted Functional Partners:
ACS99021.1
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bha:BH2165 hypothetical protein.
 
    0.924
ACT00166.1
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_1577 xylose isomerase domain-containing protein.
 
     0.741
ACS99020.1
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: ret:RHE_CH02597 AraC family transcriptional regulator.
       0.618
ACT03509.1
PFAM: major facilitator superfamily MFS_1; KEGG: pzu:PHZ_c0896 permease of the major facilitator superfamily.
  
     0.608
ACT02485.1
PFAM: protein of unknown function DUF214; KEGG: hypothetical protein.
  
     0.596
ACT02388.1
PFAM: heat shock protein DnaJ domain protein; KEGG: hypothetical protein.
  
     0.579
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: sus:Acid_0804 xylulokinase.
 
 
 0.575
xylB-3
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: sus:Acid_0804 xylulokinase.
 
 
 0.572
ACT04550.1
PFAM: protein of unknown function DUF214; KEGG: hypothetical protein.
  
     0.539
ACT03837.1
KEGG: sus:Acid_4591 hypothetical protein.
  
     0.517
Your Current Organism:
Paenibacillus sp. JDR2
NCBI taxonomy Id: 324057
Other names: P. sp. JDR-2, Paenibacillus sp. JDR-2
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