STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS99318.1PFAM: transcriptional regulator PadR family protein; KEGG: baa:BA_1551 MarR family. (109 aa)    
Predicted Functional Partners:
ACS99319.1
KEGG: baa:BA_1552 hypothetical protein.
 
     0.932
ACS99320.1
PFAM: aldo/keto reductase; KEGG: bha:BH1011 oxidoreductase.
  
    0.680
ACS99321.1
PFAM: aminoglycoside phosphotransferase; KEGG: scl:sce5395 aminoglycoside phosphotransferase.
       0.580
ACT02746.1
KEGG: bar:GBAA4814 TetR family transcriptional regulator.
  
     0.467
ACS99317.1
Transcriptional regulator, AraC family; PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bha:BH3506 AraC/XylS family transcriptional regulator.
  
    0.463
ACT02574.1
PFAM: coagulation factor 5/8 type domain protein; Carbohydrate binding family 6; SMART: coagulation factor 5/8 type domain protein; Parallel beta-helix repeat; KEGG: mlo:mll4444 hypothetical protein.
  
     0.455
ACS99296.1
PFAM: APHP domain protein; Carbohydrate binding family 6; coagulation factor 5/8 type domain protein; SMART: coagulation factor 5/8 type domain protein; Parallel beta-helix repeat; KEGG: similar to syntaxin binding protein.
  
     0.415
ACS98726.1
KEGG: swd:Swoo_2851 hypothetical protein.
 
     0.413
ACT01788.1
PFAM: regulatory protein TetR; KEGG: bar:GBAA4814 TetR family transcriptional regulator.
  
     0.413
ACS99316.1
PFAM: ThiJ/PfpI domain protein; KEGG: mms:mma_0345 ThiJ/PfpI family protein.
  
    0.403
Your Current Organism:
Paenibacillus sp. JDR2
NCBI taxonomy Id: 324057
Other names: P. sp. JDR-2, Paenibacillus sp. JDR-2
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