STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS99482.1PFAM: protein of unknown function DUF402; KEGG: bsu:BSU08680 hypothetical protein; Belongs to the UPF0374 family. (185 aa)    
Predicted Functional Partners:
ACS99483.1
TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: bar:GBAA3977 signal peptidase I S; Belongs to the peptidase S26 family.
       0.840
rnhA
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.765
ACS99485.1
KEGG: baa:BA_1117 hypothetical protein; TIGRFAM: iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PBS lyase HEAT domain protein repeat-containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein.
       0.750
ACS99481.1
PFAM: GCN5-related N-acetyltransferase; KEGG: eta:ETA_10870 acetyltransferase.
       0.736
ACS99486.1
KEGG: bsu:BSU17910 hypothetical protein.
  
    0.736
folE
KEGG: bsu:BSU22780 GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I.
       0.686
ACT04554.1
PFAM: biotin/lipoate A/B protein ligase; KEGG: bha:BH3822 hypothetical protein.
  
     0.436
ACT02652.1
Nitric-oxide synthase; PFAM: GTP-binding protein HSR1-related; KEGG: bsu:BSU25670 GTP-binding protein YqeH.
  
     0.423
queA
S-adenosylmethionine/tRNA-ribosyltransferase- isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
  
     0.418
ACS99098.1
PFAM: VanZ family protein; KEGG: baa:BA_0336 hypothetical protein.
  
     0.416
Your Current Organism:
Paenibacillus sp. JDR2
NCBI taxonomy Id: 324057
Other names: P. sp. JDR-2, Paenibacillus sp. JDR-2
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