STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS99953.1PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bha:BH2952 Mg-protoporphyrin IX monomethyl ester oxidative cyclase. (608 aa)    
Predicted Functional Partners:
ACT03897.1
PFAM: protein of unknown function DUF344; KEGG: msl:Msil_0239 protein of unknown function DUF344.
   
    0.725
ACT00778.1
KEGG: bha:BH3188 hypothetical protein.
  
     0.563
ACS99952.1
PFAM: copper amine oxidase domain protein; peptidase S1 and S6 chymotrypsin/Hap; KEGG: scl:sce1629 serine protease.
  
    0.562
ACT00859.1
Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.527
ACS99954.1
PFAM: deoxynucleoside kinase; KEGG: bsu:BSU00140 deoxyadenosine/deoxycytidine kinase.
       0.504
ACT03015.1
KEGG: bar:GBAA4645 hypothetical protein.
  
     0.489
ACT01527.1
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: baa:BA_2307 HATPase_c, Histidine kinase-, DNA gyrase B-, phytochrome-like ATPase.
  
  
 0.461
ACT01281.1
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
 
   
 0.432
ACT00091.1
KEGG: bha:BH3432 hypothetical protein.
  
     0.428
ACT01528.1
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: baa:BA_2308 response_reg, response regulator receiver domain.
  
     0.427
Your Current Organism:
Paenibacillus sp. JDR2
NCBI taxonomy Id: 324057
Other names: P. sp. JDR-2, Paenibacillus sp. JDR-2
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