STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACT00638.1PFAM: Cupin domain protein; KEGG: baa:BA_2254 DSBH, double stranded beta helix domain involved in carbohydrate binding and protein-protein. (234 aa)    
Predicted Functional Partners:
ACT00639.1
KEGG: bsu:BSU18670 hypothetical protein; TIGRFAM: bicupin, oxalate decarboxylase family; PFAM: Cupin domain protein; Cupin 2 conserved barrel domain protein.
 
     0.646
ACT00919.1
KEGG: bsu:BSU10680 spore germination protein.
  
     0.607
ACT00920.1
Hypothetical protein; KEGG: bsu:BSU10690 spore germination protein.
  
     0.581
ACT01140.1
PFAM: major facilitator superfamily MFS_1; KEGG: bsu:BSU14030 hypothetical protein.
  
     0.496
ACT04750.1
PFAM: NUDIX hydrolase; KEGG: baa:BA_2320 NUDIX, MutT-like domain.
  
     0.496
ACT00403.1
PFAM: NEAr transporter; SMART: NEAr transporter; KEGG: bha:BH3299 hypothetical protein.
  
     0.465
ACT00921.1
KEGG: baa:BA_1694 spore germination protein.
  
     0.465
ACT00017.1
Two component transcriptional regulator, AraC family; PFAM: response regulator receiver; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: bha:BH3842 two-component response regulator.
  
     0.461
ACT02622.1
KEGG: bar:GBAA4451 hypothetical protein.
  
     0.454
ACT01739.1
PFAM: DinB family protein; KEGG: bar:GBAA2558 hypothetical protein.
  
     0.434
Your Current Organism:
Paenibacillus sp. JDR2
NCBI taxonomy Id: 324057
Other names: P. sp. JDR-2, Paenibacillus sp. JDR-2
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