STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACT00742.1Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: baa:BA_1329 MarR family. (159 aa)    
Predicted Functional Partners:
ACT00743.1
PFAM: major facilitator superfamily MFS_1; KEGG: ara:Arad_10017 tetracycline efflux transporter protein.
 
   
 0.800
murI-2
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
  
    0.529
ACT00565.1
PFAM: Collagen triple helix repeat; KEGG: mlo:mlr0587 hypothetical protein.
  
     0.495
ACT03165.1
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: dat:HRM2_14860 putative MarR family protein.
  
     0.477
ACT00258.1
PFAM: Pathogenesis-related transcriptional factor and ERF protein; KEGG: ecg:E2348C_2519 predicted HNH endonuclease.
  
     0.405
ACS98779.1
Nuclease; KEGG: bsu:BSU03430 nuclease.
 
   
 0.401
Your Current Organism:
Paenibacillus sp. JDR2
NCBI taxonomy Id: 324057
Other names: P. sp. JDR-2, Paenibacillus sp. JDR-2
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