STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACT01080.1RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: hypothetical protein. (198 aa)    
Predicted Functional Partners:
ACT01081.1
KEGG: hypothetical protein.
  
 
 0.888
ACS99049.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: bha:BH0620 RNA polymerase ECF-type sigma factor.
  
     0.768
ACT03132.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: bha:BH2026 RNA polymerase ECF-type sigma factor.
  
     0.757
ACT01082.1
PFAM: Phosphoglycerate mutase; KEGG: bsu:BSU10340 hypothetical protein.
       0.752
ACS98833.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: bha:BH0620 RNA polymerase ECF-type sigma factor.
  
     0.744
ACT01086.1
PFAM: Rieske [2Fe-2S] domain protein; KEGG: baa:BA_2063 rieske [2Fe-2S] domain.
  
    0.569
ACT01083.1
KEGG: hypothetical protein.
       0.567
ACT01084.1
PFAM: conserved hypothetical protein; KEGG: baa:BA_2061 hypothetical protein.
       0.567
ACT01085.1
KEGG: hypothetical protein.
       0.567
ACT01087.1
PFAM: Cytochrome b/b6 domain; KEGG: bha:BH1673 cytochrome b6.
       0.567
Your Current Organism:
Paenibacillus sp. JDR2
NCBI taxonomy Id: 324057
Other names: P. sp. JDR-2, Paenibacillus sp. JDR-2
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