STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACT01850.1PFAM: Phytanoyl-CoA dioxygenase; KEGG: similar to Y105C5B.9. (275 aa)    
Predicted Functional Partners:
ACT00568.1
PFAM: Phytanoyl-CoA dioxygenase; KEGG: similar to Phytanoyl-CoA dioxygenase, peroxisomal precursor (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase).
  
     0.772
ACT02246.1
PFAM: Phytanoyl-CoA dioxygenase; KEGG: bpd:BURPS668_0790 mitomycin antibiotics/polyketide fumonisin biosynthesis protein.
  
     0.767
ACS99207.1
PFAM: Phytanoyl-CoA dioxygenase; KEGG: hypothetical protein.
  
     0.645
ACT01849.1
Transcriptional regulator, AraC family; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rpb:RPB_0180 AraC family transcriptional regulator.
     
 0.537
ACT02200.1
PFAM: FG-GAP repeat protein; KEGG: sus:Acid_7682 FG-GAP repeat-containing protein.
  
     0.537
ACT01870.1
PFAM: Phytanoyl-CoA dioxygenase; PBS lyase HEAT domain protein repeat-containing protein; HEAT domain containing protein; SMART: PBS lyase HEAT domain protein repeat-containing protein; KEGG: hypothetical protein.
  
     0.481
ACT04054.1
PFAM: Cupin 2 conserved barrel domain protein; KEGG: sus:Acid_3756 cupin 2 domain-containing protein.
 
   
 0.454
ACT02204.1
PFAM: amidohydrolase 2; KEGG: pat:Patl_0798 amidohydrolase 2.
  
     0.450
ACS99230.1
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: hypothetical protein.
  
     0.446
ACT01855.1
PFAM: amidohydrolase 2; KEGG: avi:Avi_6094 hypothetical protein.
  
     0.437
Your Current Organism:
Paenibacillus sp. JDR2
NCBI taxonomy Id: 324057
Other names: P. sp. JDR-2, Paenibacillus sp. JDR-2
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